Top cofit genes for PP_0191 from Pseudomonas putida KT2440

Transcriptional regulatory protein AlgQ
SEED: Regulator of sigma D
KEGG: regulator of sigma D

Rank	Hit	Name	Description	Conserved?	Cofitness
1	PP_1623		RNA polymerase, sigma S (sigma 38) factor	0.88	0.42
2	PP_0397		protein kinase	0.77	0.39
3	PP_0395		putative type IV piliation protein	0.82	0.38
4	PP_0396		conserved protein of unknown function	0.70	0.38
5	PP_2144		Transcriptional regulator, TetR family	0.78	0.35
6	PP_4337		chemotaxis response regulator protein-glutamate methylesterase of group 1 operon	0.51	0.30
7	PP_4375		flagellar chaperone, inhibits premature FliC assembly	0.49	0.30
8	PP_2325		2-dehydropantoate 2-reductase	0.60	0.29
9	PP_0951		Ribosome hibernation promoting factor	0.79	0.29
10	PP_4376		flagellar filament capping protein	0.29	0.27
11	PP_4941		conserved exported protein of unknown function	0.40	0.27
12	PP_4365		Flagellar protein FliJ	0.82	0.26
13	PP_5145		phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins)	0.63	0.26
14	PP_4382		Peptidoglycan hydrolase FlgJ	0.84	0.26
15	PP_4381		Flagellar hook-associated protein FlgK	0.86	0.26
16	PP_4366		flagellum-specific ATP synthase	0.85	0.25
17	PP_4378		flagellin, filament structural protein	no	0.25
18	PP_0948		Phosphocarrier protein HPr	0.58	0.25
19	PP_4394		flagella basal body P-ring formation protein	0.86	0.25
20	PP_4367		Flagellar assembly protein FliH	0.51	0.25

Or look for negative cofitness