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  • Top cofit genes for PP_0179 from Pseudomonas putida KT2440

    putative efflux transporter
    SEED: Outer membrane component of tripartite multidrug resistance system

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_0176 putative efflux transporter 0.93 0.69
    2 PP_0178 putative efflux pump 0.87 0.59
    3 PP_0177 conserved protein of unknown function 0.93 0.50
    4 PP_3656 putative Aromatic compound-specific porin no 0.33
    5 PP_1968 TetR family transcriptional regulator 0.22 0.28
    6 PP_3658 putative Aromatic compound MFS transporter no 0.27
    7 PP_3282 3-hydroxyadipyl-CoA dehydrogenase no 0.25
    8 PP_3285 detoxifying thioesterase of the phenylacetate degradation pathway no 0.23
    9 PP_3270 oxepin-CoA hydrolase/3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase no 0.23
    10 PP_3272 acetate permease no 0.22
    11 PP_3657 P-nitrobenzoate reductase NfnB no 0.21
    12 PP_2437 putative Acyl-CoA dehydrogenase no 0.21
    13 PP_2048 putative acyl-CoA dehydrogenase no 0.19
    14 PP_3659 transcriptional regulator, AraC family no 0.19
    15 PP_3284 enoyl-CoA hydratase-isomerase no 0.18
    16 PP_3276 ring 1,2-phenylacetyl-CoA epoxidase beta subunit no 0.18
    17 PP_3651 Sensor histidine kinase/response regulator no 0.17
    18 PP_3278 ring 1,2-phenylacetyl-CoA epoxidase alpha subunit no 0.17
    19 PP_0858 putative methionine/glutamine aminotransferase no 0.17
    20 PP_3279 phenylacetate-CoA ligase no 0.17

    Or look for negative cofitness