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  • Top cofit genes for PP_0167 from Pseudomonas putida KT2440

    Toxin secretion ATP-binding protein
    SEED: Type I secretion system ATPase, LssB family LapB
    KEGG: ATP-binding cassette, subfamily C, bacterial LapB

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_0168 putative surface adhesion protein no 0.99
    2 PP_0166 HlyD family secretion protein 0.98 0.99
    3 PP_4519 Agglutination protein 0.96 0.98
    4 PP_0165 GGDEF domain protein 0.95 0.98
    5 PP_5429 protein of unknown function no 0.76
    6 PP_4373 Transcriptional regulator FleQ 0.90 0.62
    7 PP_0672 Sensory box protein 0.22 0.58
    8 PP_3761 Sensor histidine kinase/response regulator 0.34 0.50
    9 PP_4959 diguanylate cyclase 0.45 0.46
    10 PP_2889 putative Transmembrane regulator PrtR 0.28 0.36
    11 PP_5430 protein of unknown function no 0.36
    12 PP_4363 Sensor histidine kinase/response regulator 0.50 0.35
    13 PP_1428 Sigma factor AlgU negative regulatory protein 0.74 0.34
    14 PP_1488 Methyl-accepting chemotaxis transducer 0.65 0.34
    15 PP_0355 Response regulator no 0.33
    16 PP_2052 putative bifunctional enzyme: sugar-phosphatase/mannitol-1-phosphate 5-dehydrogenase no 0.32
    17 PP_2331 conserved membrane protein of unknown function 0.42 0.31
    18 PP_1113 Pyridoxal-phosphate dependent enzyme family protein no 0.31
    19 PP_5232 conserved protein of unknown function no 0.30
    20 PP_0743 conserved protein with NAD(P)-binding Rossmann-fold domain 0.48 0.30

    Or look for negative cofitness