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  • Top cofit genes for PP_0166 from Pseudomonas putida KT2440

    HlyD family secretion protein
    SEED: Type I secretion system, membrane fusion protein LapC
    KEGG: membrane fusion protein LapC

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_0167 Toxin secretion ATP-binding protein 0.98 0.99
    2 PP_0168 putative surface adhesion protein no 0.99
    3 PP_4519 Agglutination protein 0.92 0.98
    4 PP_0165 GGDEF domain protein 0.94 0.97
    5 PP_5429 protein of unknown function no 0.75
    6 PP_4373 Transcriptional regulator FleQ 0.85 0.63
    7 PP_0672 Sensory box protein no 0.59
    8 PP_3761 Sensor histidine kinase/response regulator 0.68 0.52
    9 PP_4959 diguanylate cyclase 0.45 0.48
    10 PP_0355 Response regulator no 0.37
    11 PP_2889 putative Transmembrane regulator PrtR no 0.37
    12 PP_4363 Sensor histidine kinase/response regulator 0.49 0.36
    13 PP_1428 Sigma factor AlgU negative regulatory protein 0.36 0.35
    14 PP_1488 Methyl-accepting chemotaxis transducer 0.72 0.35
    15 PP_5430 protein of unknown function no 0.34
    16 PP_1113 Pyridoxal-phosphate dependent enzyme family protein no 0.33
    17 PP_5053 Protein-export protein SecB no 0.32
    18 PP_4342 flagellar synthesis regulator, putative ATPase no 0.32
    19 PP_2331 conserved membrane protein of unknown function 0.41 0.32
    20 PP_2052 putative bifunctional enzyme: sugar-phosphatase/mannitol-1-phosphate 5-dehydrogenase no 0.31

    Or look for negative cofitness