Top cofit genes for PP_0165 from Pseudomonas putida KT2440

GGDEF domain protein
SEED: Membrane bound c-di-GMP receptor LapD

Rank	Hit	Name	Description	Conserved?	Cofitness
1	PP_0167		Toxin secretion ATP-binding protein	0.91	0.98
2	PP_0168		putative surface adhesion protein	no	0.97
3	PP_0166		HlyD family secretion protein	0.92	0.97
4	PP_4519		Agglutination protein	0.79	0.96
5	PP_5429		protein of unknown function	no	0.77
6	PP_0672		Sensory box protein	no	0.58
7	PP_4373		Transcriptional regulator FleQ	0.63	0.58
8	PP_3761		Sensor histidine kinase/response regulator	0.36	0.46
9	PP_4959		diguanylate cyclase	0.24	0.42
10	PP_5430		protein of unknown function	no	0.35
11	PP_2889		putative Transmembrane regulator PrtR	no	0.34
12	PP_2052		putative bifunctional enzyme: sugar-phosphatase/mannitol-1-phosphate 5-dehydrogenase	no	0.34
13	PP_1488		Methyl-accepting chemotaxis transducer	no	0.34
14	PP_4363		Sensor histidine kinase/response regulator	0.48	0.33
15	PP_1428		Sigma factor AlgU negative regulatory protein	0.30	0.30
16	PP_0917		Chromosome initiation inhibitor	0.55	0.29
17	PP_5232		conserved protein of unknown function	no	0.29
18	PP_0355		Response regulator	no	0.29
19	PP_2413		GGDEF family protein	0.78	0.28
20	PP_1492		Sensor histidine kinase/response regulator	0.35	0.28

Or look for negative cofitness