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  • Top cofit genes for PP_0163 from Pseudomonas putida KT2440

    putative transcriptional regulator
    SEED: Predicted regulator PutR for proline utilization, GntR family

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_1779 Lipopolysaccharide ABC export system, ATP-binding protein no 0.36
    2 PP_1778 Lipopolysaccharide ABC export system, permease protein no 0.34
    3 PP_1804 Glycosyl transferase WbpL 0.33 0.34
    4 PP_1623 RNA polymerase, sigma S (sigma 38) factor 0.55 0.33
    5 PP_4726 Chaperone protein DnaJ no 0.33
    6 PP_1776 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase 0.35 0.32
    7 PP_1802 glycosyl transferase no 0.32
    8 PP_1801 Glycosyl transferase WbpY 0.30 0.31
    9 PP_4936 O-antigen polymerase no 0.31
    10 PP_1805 Polysaccharide biosynthesis protein 0.34 0.31
    11 PP_1780 putative mannosyltransferase no 0.31
    12 PP_4470 putative transcriptional regulator (Arc domain-containing) no 0.31
    13 PP_1777 phosphomannomutase no 0.30
    14 PP_5145 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) no 0.30
    15 PP_1799 GDP-mannose 4,6-dehydratase 0.41 0.30
    16 PP_4938 putative Glycosyl transferase no 0.29
    17 PP_5693 conserved protein of unknown function no 0.29
    18 PP_1800 Oxidoreductase Rmd no 0.29
    19 PP_0164 conserved protein of unknown function no 0.29
    20 PP_0789 N-acetyl-anhydromuramyl-L-alanine-amidase no 0.29

    Or look for negative cofitness