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  • Top cofit genes for PP_0159 from Pseudomonas putida KT2440

    putative CoA-transferase family III
    SEED: L-carnitine dehydratase/bile acid-inducible protein F

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_0158 glutaryl-CoA dehydrogenase 0.97 0.59
    2 PP_0157 transcriptional activator of gcdH, LysR family 0.97 0.54
    3 PP_0160 putative ferrioxamine receptor no 0.39
    4 PP_0213 succinate-semialdehyde dehydrogenase (NADP+) 0.46 0.38
    5 PP_3681 putative Helicase 0.64 0.35
    6 PP_0155 pyridine nucleotide transhydrogenase, beta subunit 0.53 0.34
    7 PP_1937 putative helicase no 0.31
    8 PP_2910 L-2-hydroxyglutarate oxidase no 0.31
    9 PP_1118 Recombinase-related protein no 0.30
    10 PP_1952 Metallo-beta-lactamase family protein no 0.30
    11 PP_1949 Oxidoreductase, GMC family no 0.29
    12 PP_1156 putative inner membrane protein 0.50 0.29
    13 PP_5404 Transposition protein, TnsC-related protein no 0.28
    14 PP_3680 conserved protein of unknown function no 0.28
    15 PP_4458 putative Opine ABC transporter, periplasmic binding protein no 0.28
    16 PP_0156 pyridine nucleotide transhydrogenase subunit alpha 0.48 0.28
    17 PP_4675 methionine sulfoxide reductase heme-binding subunit 0.42 0.28
    18 PP_1945 methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase no 0.28
    19 PP_4429 Transcriptional regulator, GntR family no 0.27
    20 PP_2909 glutarate hydroxylase (from data) no 0.26

    Or look for negative cofitness