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  • Top cofit genes for PP_0157 from Pseudomonas putida KT2440

    transcriptional activator of gcdH, LysR family
    SEED: Chromosome initiation inhibitor

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_0159 putative CoA-transferase family III 0.97 0.54
    2 PP_0158 glutaryl-CoA dehydrogenase 0.94 0.45
    3 PP_2910 L-2-hydroxyglutarate oxidase no 0.31
    4 PP_0160 putative ferrioxamine receptor 0.64 0.28
    5 PP_0213 succinate-semialdehyde dehydrogenase (NADP+) 0.43 0.27
    6 PP_5639 conserved exported protein of unknown function no 0.25
    7 PP_3681 putative Helicase no 0.25
    8 PP_0148 conserved protein of unknown function no 0.22
    9 PP_0570 lipoprotein of unknown function no 0.22
    10 PP_0572 peptidoglycan glycosyltransferase no 0.22
    11 PP_1118 Recombinase-related protein no 0.21
    12 PP_5405 transposase no 0.21
    13 PP_5463 conserved protein of unknown function no 0.21
    14 PP_0430 conserved protein of unknown function no 0.20
    15 PP_2909 glutarate hydroxylase (from data) no 0.20
    16 PP_1156 putative inner membrane protein no 0.20
    17 PP_5490 site-specific DNA recombinase 0.31 0.20
    18 PP_0161 putative transmembrane sensor no 0.20
    19 PP_5384 copper sensor protein no 0.19
    20 PP_2240 putative ABC efflux transporter, permease/ATP-binding protein no 0.19

    Or look for negative cofitness