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Cofit
Protein
Homologs
Top cofit genes for PP_0131 from
Pseudomonas putida KT2440
putative membrane-anchored phosphodiesterase
SEED: Rtn protein
Rank
Hit
Name
Description
Conserved?
Cofitness
1
PP
_1154
Sensory box protein
no
0.38
2
PP
_3490
manganese-oxidizing multicopper oxidase
no
0.35
3
PP
_1778
Lipopolysaccharide ABC export system, permease protein
no
0.33
4
PP
_0547
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase
0.81
0.32
5
PP
_1779
Lipopolysaccharide ABC export system, ATP-binding protein
no
0.30
6
PP
_0396
conserved protein of unknown function
no
0.27
7
PP
_0395
putative type IV piliation protein
no
0.26
8
PP
_0397
protein kinase
no
0.26
9
PP
_1623
RNA polymerase, sigma S (sigma 38) factor
0.65
0.24
10
PP
_3695
conserved protein of unknown function
no
0.23
11
PP
_5606
conserved exported protein of unknown function with YVTN beta-propeller repeat
no
0.22
12
PP
_4338
Chemotaxis histidine kinase CheA
no
0.22
13
PP
_3008
conserved exported protein of unknown function
no
0.21
14
PP
_4824
Sensor histidine kinase/response regulator
no
0.21
15
PP
_4332
Chemotaxis protein CheW
0.28
0.20
16
PP
_4943
putative Glycosyl transferase
no
0.20
17
PP
_4940
Putative glycosyltransferase
no
0.20
18
PP
_4939
conserved protein of unknown function
no
0.20
19
PP
_1198
transcriptional regulator, Cro/CI family (higA antitoxin like)
no
0.20
20
PP
_1733
membrane ATPase of the MinC-MinD-MinE system
0.56
0.20
Or look for
negative cofitness