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  • Top cofit genes for PP_0084 from Pseudomonas putida KT2440

    HTH-type transcriptional regulator TrpI
    SEED: Glycine cleavage system transcriptional activator

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_1011 glucokinase 0.43 0.32
    2 PP_3417 D-gluconate transporter 0.41 0.32
    3 PP_5303 aminoacrylate/iminopropionate hydrolase/deaminase 0.54 0.29
    4 PP_1022 glucose 6-phosphate-1-dehydrogenase 0.35 0.28
    5 PP_1444 quinoprotein glucose dehydrogenase 0.24 0.27
    6 PP_5347 pyruvate carboxylase subunit A 0.47 0.27
    7 PP_5348 Transcriptional regulator, LysR family 0.55 0.26
    8 PP_2168 Transaldolase 0.45 0.26
    9 PP_5346 pyruvate carboxylase subunit B 0.44 0.25
    10 PP_1017 mannose/glucose ABC transporter, permease protein 0.48 0.25
    11 PP_5097 homoserine O-acetyltransferase 0.48 0.25
    12 PP_0363 8-amino-7-oxononanoate synthase 0.35 0.25
    13 PP_1015 mannose/glucose ABC transporter, glucose-binding periplasmic protein 0.45 0.25
    14 PP_4984 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase no 0.24
    15 PP_1016 mannose/glucose ABC transporter, permease protein 0.44 0.24
    16 PP_0365 Malonyl-[acyl-carrier protein] O-methyltransferase no 0.24
    17 PP_1304 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase 0.60 0.24
    18 PP_5098 methionine biosynthesis protein MetW 0.49 0.24
    19 PP_2001 O-succinylhomoserine sulfhydrylase 0.48 0.23
    20 PP_4696 Nitrogen regulation protein NR(I) 0.44 0.23

    Or look for negative cofitness