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  • Top cofit genes for PP_0069 from Pseudomonas putida KT2440

    putative Rossmann fold nucleotide-binding protein
    SEED: Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake
    KEGG: DNA processing protein

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_1798 Outer membrane efflux protein no 0.40
    2 PP_1204 putative Lipoprotein 0.14 0.38
    3 PP_0066 Ribosomal RNA small subunit methyltransferase B 0.31 0.37
    4 PP_1627 conserved protein of unknown function no 0.37
    5 PP_1774 conserved exported protein of unknown function no 0.34
    6 PP_3627 conserved protein of unknown function no 0.33
    7 PP_1871 Protease HtpX 0.30 0.32
    8 PP_0540 conserved inner membrane protein 0.66 0.32
    9 PP_1803 UDP-sugar epimerase 0.26 0.32
    10 PP_1797 HlyD family secretion protein no 0.31
    11 PP_5283 periplasmic dipeptide transport protein 0.56 0.30
    12 PP_1777 phosphomannomutase no 0.30
    13 PP_1776 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase 0.26 0.30
    14 PP_1801 Glycosyl transferase WbpY 0.20 0.30
    15 PP_1800 Oxidoreductase Rmd no 0.30
    16 PP_1655 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.44 0.30
    17 PP_2148 transcription-repair coupling factor 0.31 0.30
    18 PP_2027 conserved exported protein of unknown function 0.46 0.30
    19 PP_5279 conserved protein of unknown function no 0.29
    20 PP_4971 putative Outer membrane-bound lytic murein transglycolase A 0.20 0.29

    Or look for negative cofitness