Top cofit genes for PP_0055 from Pseudomonas putida KT2440

transcriptional regulator
SEED: Transcriptional regulator, LysR family

Rank	Hit	Name	Description	Conserved?	Cofitness
1	PP_0056		choline dehydrogenase	0.47	0.88
2	PP_0057		major facilitator family transporter	no	0.70
3	PP_0597		methylmalonate-semialdehyde dehydrogenase	0.61	0.42
4	PP_4667		methylmalonate-semialdehyde dehydrogenase	0.33	0.40
5	PP_4668		Transcriptional regulator, LysR family	0.32	0.33
6	PP_1984		Transcriptional regulator, LysR family	no	0.33
7	PP_0595		Transcriptional regulator, LysR family	no	0.31
8	PP_4666		3-hydroxyisobutyrate dehydrogenase	0.58	0.29
9	PP_5085		malic enzyme B	0.26	0.28
10	PP_0596		Omega-amino acid--pyruvate aminotransferase	0.32	0.25
11	PP_2132		Universal stress protein	no	0.24
12	PP_2868		Transcriptional regulator, Cro/CI family	no	0.24
13	PP_4628		conserved protein of unknown function	no	0.23
14	PP_4565		Isocitrate dehydrogenase kinase/phosphatase	no	0.23
15	PP_3491		Enoly-coenzyme A hydratase/isomerase family protein	0.43	0.23
16	PP_0356		malate synthase G	0.54	0.21
17	PP_0248		Probable alpha-L-glutamate ligase	no	0.20
18	PP_1826		Hydrolase, isochorismatase family	0.24	0.19
19	PP_4699		3-methyl-2-oxobutanoate hydroxymethyltransferase	no	0.19
20	PP_4695		Sensory box histidine kinase	0.24	0.18

Or look for negative cofitness