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  • Top cofit genes for PP_0046 from Pseudomonas putida KT2440

    tyrosine-specific outer membrane porin D
    SEED: Outer membrane porin, OprD family

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_3790 diaminopimelate epimerase no 0.26
    2 PP_0043 cation efflux system protein no 0.23
    3 PP_1348 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase no 0.23
    4 PP_3786 aminotransferase no 0.22
    5 PP_0037 porin P no 0.22
    6 PP_0030 metal-sensor histidine kinase 0.37 0.21
    7 PP_0041 cadmium translocating P-type ATPase no 0.21
    8 PP_3789 putative Efflux transporter no 0.21
    9 PP_3788 putative Non-ribosomal peptide synthetase no 0.21
    10 PP_1063 DNA-binding transcriptional regulator, homocysteine-binding no 0.21
    11 PP_4922 Phosphomethylpyrimidine synthase 0.40 0.21
    12 PP_4428 Amino acid ABC transporter, periplasmic amino acid-binding protein no 0.21
    13 PP_2714 Sensor histidine kinase no 0.20
    14 PP_0662 putative Threonine synthase no 0.20
    15 PP_5104 thiazole synthase no 0.20
    16 PP_0787 quinolinate phosphoribosyltransferase (decarboxylating) monomer no 0.20
    17 PP_4723 Carbamoyl-phosphate synthase large chain no 0.19
    18 PP_3787 conserved protein of unknown function no 0.19
    19 PP_5687 putative permease of the major facilitator superfamily no 0.19
    20 PP_5380 copper resistance protein A no 0.19

    Or look for negative cofitness