Top cofit genes for PP_0003 from Pseudomonas putida KT2440

16S RNA methyltransferase
SEED: rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB
KEGG: ribosomal RNA small subunit methyltransferase G

Rank	Hit	Name	Description	Conserved?	Cofitness
1	PP_0123		DNA polymerase I, 5	0.55	0.41
2	PP_4722		Transcription elongation factor GreA	0.73	0.41
3	PP_4546		ATP-dependent helicase HrpA	0.46	0.36
4	PP_0697		ribosomal-protein-S18-alanine N-acetyltransferase	0.40	0.34
5	PP_5294		Ribonuclease PH	0.77	0.34
6	PP_5064		choline dehydrogenase	no	0.33
7	PP_1226		pre-queuosine 0 synthase	0.61	0.33
8	PP_0832		S-adenosylmethionine:tRNA ribosyltransferase-isomerase	0.71	0.32
9	PP_2929		Carboxynorspermidine/carboxyspermidine decarboxylase	no	0.32
10	PP_4880		exoribonuclease R	0.70	0.32
11	PP_1994		tRNA pseudouridine (38-40)synthase	0.75	0.31
12	PP_2475		Transcriptional regulator, TetR family	no	0.31
13	PP_4507		potassium transporter	0.61	0.30
14	PP_0674		ADP/ATP ratio sensor and inhibitor of translation	0.75	0.30
15	PP_4939		conserved protein of unknown function	0.39	0.30
16	PP_4710		tRNA pseudouridine 55 synthase	0.88	0.30
17	PP_4988		signal transduction histidine kinase CheA/CheY-like receiver	no	0.29
18	PP_5025		Glucans biosynthesis glucosyltransferase H	0.71	0.29
19	PP_2378		Fe/S biogenesis protein NfuA	0.65	0.29
20	PP_4475		succinylglutamate desuccinylase	no	0.28

Or look for negative cofitness