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  • Top cofit genes for PFR28_04192 from Pseudomonas sp. RS175

    DNA ligase B
    SEED: DNA ligase (EC 6.5.1.2)
    KEGG: DNA ligase (NAD+)

    Rank Hit Name Description Conserved? Cofitness  
    1 PFR28_03625 Metalloprotease LoiP 0.61 0.47
    2 PFR28_04447 Serine/threonine-protein kinase PknD no 0.42
    3 PFR28_04443 hypothetical protein no 0.41
    4 PFR28_04450 hypothetical protein 0.23 0.39
    5 PFR28_04454 hypothetical protein no 0.38
    6 PFR28_04405 Cardiolipin synthase C no 0.38
    7 PFR28_01551 Membrane-bound lytic murein transglycosylase D no 0.36
    8 PFR28_04737 Protein YdgA no 0.35
    9 PFR28_04452 hypothetical protein no 0.33
    10 PFR28_00322 Lon protease 0.33 0.33
    11 PFR28_04323 hypothetical protein 0.22 0.33
    12 PFR28_01991 hypothetical protein no 0.33
    13 PFR28_04463 hypothetical protein no 0.33
    14 PFR28_01727 Outer membrane protein OprM no 0.32
    15 PFR28_04446 Macrolide export ATP-binding/permease protein MacB no 0.32
    16 PFR28_04878 Fatty acid oxidation complex subunit alpha no 0.31
    17 PFR28_01860 hypothetical protein no 0.31
    18 PFR28_02135 hypothetical protein no 0.30
    19 PFR28_04706 hypothetical protein no 0.30
    20 PFR28_04644 hypothetical protein no 0.30

    Or look for negative cofitness