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Cofit
Protein
Homologs
Top cofit genes for PFR28_03962 from
Pseudomonas sp. RS175
ATP-dependent RNA helicase SrmB
SEED: Lhr-like helicases
Rank
Hit
Name
Description
Conserved?
Cofitness
1
PFR28
_03856
LPS-assembly lipoprotein LptE
no
0.48
2
PFR28
_04450
hypothetical protein
0.56
0.45
3
PFR28
_04462
hypothetical protein
0.23
0.45
4
PFR28
_00281
hypothetical protein
0.48
0.43
5
PFR28
_04447
Serine/threonine-protein kinase PknD
0.40
0.42
6
PFR28
_01733
Outer membrane protein TolC
no
0.42
7
PFR28
_04469
putative deoxyribonuclease RhsA
no
0.41
8
PFR28
_02116
hypothetical protein
no
0.41
9
PFR28
_04452
hypothetical protein
0.48
0.40
10
PFR28
_04451
hypothetical protein
no
0.40
11
PFR28
_01803
Transcriptional regulatory protein DegU
no
0.40
12
PFR28
_03500
NADPH-dependent ferric-chelate reductase
no
0.39
13
PFR28
_04454
hypothetical protein
no
0.39
14
PFR28
_04457
hypothetical protein
no
0.39
15
PFR28
_04953
Maltodextrin phosphorylase
no
0.39
16
PFR28
_04464
Protein ClpV1
no
0.38
17
PFR28
_03041
hypothetical protein
no
0.38
18
PFR28
_04448
Protein phosphatase PrpC
no
0.38
19
PFR28
_03577
Multidrug resistance protein MdtB
0.17
0.38
20
PFR28
_04628
Thiol:disulfide interchange protein DsbA
no
0.38
Or look for
negative cofitness