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Cofit
Protein
Homologs
Top cofit genes for PFLU_RS29495 from
Pseudomonas fluorescens SBW25
YicC family protein
SEED: Protein YicC
Rank
Hit
Name
Description
Conserved?
Cofitness
1
PFLU
_RS10725
transporter substrate-binding domain-containing protein
no
0.71
2
PFLU
_RS12500
MacB family efflux pump subunit
no
0.57
3
PFLU
_RS21365
NCS2 family permease
0.68
0.55
4
PFLU
_RS08255
hypothetical protein
no
0.54
5
PFLU
_RS08210
DUF1989 domain-containing protein
no
0.49
6
PFLU
_RS02770
urease accessory protein UreG
0.29
0.48
7
PFLU
_RS18560
cold shock domain-containing protein CspD
no
0.47
8
PFLU
_RS11030
response regulator transcription factor
no
0.47
9
PFLU
_RS12545
LysR family transcriptional regulator
no
0.45
10
PFLU
_RS20620
alpha/beta fold hydrolase
no
0.45
11
PFLU
_RS05700
bacterioferritin-associated ferredoxin
no
0.45
12
PFLU
_RS24915
tyrosine-type recombinase/integrase
no
0.45
13
PFLU
_RS05270
DNA repair protein RecO
no
0.44
14
PFLU
_RS06415
5'/3'-nucleotidase SurE
0.33
0.43
15
PFLU
_RS02330
ABC transporter permease
no
0.43
16
PFLU
_RS29120
YaiI/YqxD family protein
no
0.43
17
PFLU
_RS00650
ABC transporter permease
no
0.43
18
PFLU
_RS12745
RNA polymerase sigma factor
no
0.42
19
PFLU
_RS10070
3-isopropylmalate dehydratase small subunit
no
0.42
20
PFLU
_RS31440
hypothetical protein
no
0.42
Or look for
negative cofitness