Top cofit genes for PFLU_RS04140 from Pseudomonas fluorescens SBW25

response regulator transcription factor
SEED: Dna binding response regulator PrrA (RegA)
KEGG: two-component system, response regulator RegA

Rank	Hit	Name	Description	Conserved?	Cofitness
1	PFLU_RS25215		cytochrome o ubiquinol oxidase subunit I	0.80	0.78
2	PFLU_RS25205		cytochrome o ubiquinol oxidase subunit IV	0.65	0.77
3	PFLU_RS04480		uracil-xanthine permease	no	0.76
4	PFLU_RS01690		nitrogen regulation protein NR(II)	0.69	0.75
5	PFLU_RS04485		uracil phosphoribosyltransferase	0.50	0.75
6	PFLU_RS25200		protoheme IX farnesyltransferase	0.64	0.75
7	PFLU_RS04020		PTS fructose-like transporter subunit IIB	no	0.73
8	PFLU_RS29105		DedA family protein	0.36	0.73
9	PFLU_RS25790		polyribonucleotide nucleotidyltransferase	0.25	0.72
10	PFLU_RS23260		carbon storage regulator CsrA	0.56	0.72
11	PFLU_RS29480		exodeoxyribonuclease III	0.33	0.71
12	PFLU_RS25220		ubiquinol oxidase subunit II	0.53	0.71
13	PFLU_RS25210		cytochrome o ubiquinol oxidase subunit III	0.77	0.71
14	PFLU_RS29780		acyl-CoA thioesterase	no	0.71
15	PFLU_RS02625		ribonuclease R	0.43	0.70
16	PFLU_RS17115		DUF4381 domain-containing protein	0.44	0.70
17	PFLU_RS02230		trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	no	0.69
18	PFLU_RS29505		DNA-directed RNA polymerase subunit omega	0.43	0.68
19	PFLU_RS08655		heme ABC transporter permease	0.91	0.68
20	PFLU_RS31075		hypothetical protein	no	0.68

Or look for negative cofitness