Top cofit genes for PFLU_RS03540 from Pseudomonas fluorescens SBW25

type III secretion protein
SEED: type III secretion protein HrpP

Rank	Hit	Name	Description	Conserved?	Cofitness
1	PFLU_RS21075		RraA family protein	no	0.57
2	PFLU_RS01530		ABC transporter permease	no	0.57
3	PFLU_RS09560		NAD-dependent succinate-semialdehyde dehydrogenase	no	0.56
4	PFLU_RS07955		BcpO-related WXXGXW repeat protein	no	0.55
5	PFLU_RS25515		tryptophan 2,3-dioxygenase	no	0.54
6	PFLU_RS07765		cupredoxin family protein	no	0.54
7	PFLU_RS18420		hypothetical protein	no	0.54
8	PFLU_RS26925		hypothetical protein	no	0.51
9	PFLU_RS20415		hypothetical protein	no	0.51
10	PFLU_RS27890		hypothetical protein	no	0.51
11	PFLU_RS28360		NlpC/P60 family protein	no	0.51
12	PFLU_RS15465		TetR/AcrR family transcriptional regulator	no	0.50
13	PFLU_RS09245		quaternary ammonium compound efflux SMR transporter SugE	no	0.50
14	PFLU_RS19795		GNAT family N-acetyltransferase	no	0.49
15	PFLU_RS28310		response regulator	no	0.48
16	PFLU_RS07610		MATE family efflux transporter	no	0.48
17	PFLU_RS12650		hypothetical protein	no	0.48
18	PFLU_RS16765		GNAT family N-acetyltransferase	no	0.48
19	PFLU_RS12865		microcin C ABC transporter permease YejB	no	0.47
20	PFLU_RS08180		ketoacyl-ACP synthase III	no	0.47

Or look for negative cofitness