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  • Top cofit genes for OKFHMN_03485 from Escherichia coli ECRC100

    comR: TetR family copper-responsive transcriptional repressor ComR
    SEED: putative transcriptional repressor

    Rank Hit Name Description Conserved? Cofitness  
    1 OKFHMN_23200 ompC porin OmpC 0.89 0.88
    2 OKFHMN_12220 rnr ribonuclease R 0.70 0.82
    3 OKFHMN_13350 yjaG Uncharacterized protein YjaG 0.68 0.80
    4 OKFHMN_08405 thiI tRNA sulfurtransferase 0.71 0.78
    5 OKFHMN_13305 16S_rrna 16S ribosomal RNA no 0.77
    6 OKFHMN_01330 ddpC D,D-dipeptide ABC transporter permease no 0.77
    7 OKFHMN_22650 yfcJ Uncharacterized MFS-type transporter YfcJ no 0.77
    8 OKFHMN_22300 nupC nucleoside permease NupC 0.49 0.75
    9 OKFHMN_17930 ptsN PTS IIA-like nitrogen regulatory protein PtsN 0.55 0.75
    10 OKFHMN_00710 phage head-tail connector protein no 0.74
    11 OKFHMN_10825 surA peptidylprolyl isomerase SurA 0.76 0.74
    12 OKFHMN_17925 rapZ RNase adapter RapZ 0.63 0.74
    13 OKFHMN_21905 bcp thioredoxin-dependent thiol peroxidase 0.49 0.74
    14 OKFHMN_11175 ettA energy-dependent translational throttle protein EttA 0.75 0.73
    15 OKFHMN_23855 Tape measure protein no 0.73
    16 OKFHMN_21250 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.62 0.73
    17 OKFHMN_06425 T3SS effector protein NleH no 0.73
    18 OKFHMN_20290 TPM-phosphatase domain-containing protein no 0.72
    19 OKFHMN_23655 bglX beta-glucosidase BglX 0.67 0.72
    20 OKFHMN_11300 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.63 0.72

    Or look for negative cofitness