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Cofit
Top cofit genes for LU632_RS23295 from
Erwinia tracheiphila SCR3
LrgB family protein
Rank
Hit
Name
Description
Conserved?
Cofitness
1
LU632
_RS04485
SDR family oxidoreductase
no
0.63
2
LU632
_RS01695
phage tail sheath family protein
no
0.60
3
LU632
_RS05250
hypothetical protein
no
0.59
4
LU632
_RS25170
phage GP46 family protein
no
0.56
5
LU632
_RS24130
yigB
5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB
no
0.56
6
LU632
_RS25955
baseplate J/gp47 family protein
no
0.54
7
LU632
_RS20890
kup
low affinity potassium transporter Kup
no
0.54
8
LU632
_RS21110
rlmE
23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE
no
0.54
9
LU632
_RS16200
hypothetical protein
no
0.54
10
LU632
_RS20535
exbD
TonB system transport protein ExbD
no
0.53
11
LU632
_RS22215
ligB
NAD-dependent DNA ligase LigB
no
0.53
12
LU632
_RS18685
DUF2635 domain-containing protein
no
0.52
13
LU632
_RS20910
tRNA isopentenyl-2-thiomethyl-A-37 hydroxylase MiaE
no
0.52
14
LU632
_RS12100
type II secretion system protein GspD
no
0.52
15
LU632
_RS01485
hypothetical protein
no
0.51
16
LU632
_RS07830
DedA family protein
no
0.51
17
LU632
_RS22895
pilM
pilus assembly protein PilM
no
0.51
18
LU632
_RS09250
glycoside hydrolase family 15 protein
no
0.50
19
LU632
_RS07645
putative holin
no
0.50
20
LU632
_RS24390
ilvY
HTH-type transcriptional activator IlvY
no
0.50
Or look for
negative cofitness