Top cofit genes for LU632_RS03400 from Erwinia tracheiphila SCR3

integrase family protein
SEED: putative phage integrase

Rank	Hit	Name	Description	Conserved?	Cofitness
1	LU632_RS10410	flgE	flagellar hook protein FlgE	no	0.54
2	LU632_RS05250		hypothetical protein	no	0.53
3	LU632_RS00840	zinT	metal-binding protein ZinT	no	0.51
4	LU632_RS08300	arsC	arsenate reductase (glutaredoxin)	no	0.51
5	LU632_RS13930		transposase	no	0.51
6	LU632_RS15355		recombinase	no	0.50
7	LU632_RS06930		hypothetical protein	no	0.50
8	LU632_RS00570		SDR family oxidoreductase	no	0.49
9	LU632_RS25950		DUF551 domain-containing protein	no	0.47
10	LU632_RS12885		ABC transporter substrate-binding protein	no	0.46
11	LU632_RS07180		phage head-binding domain-containing protein	no	0.46
12	LU632_RS08240		YfgG family protein	no	0.46
13	LU632_RS03045	ampD	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	no	0.46
14	LU632_RS01395		TIGR03745 family integrating conjugative element membrane protein	no	0.46
15	LU632_RS04085		hypothetical protein	no	0.46
16	LU632_RS24575		hypothetical protein	no	0.45
17	LU632_RS20050	fhuD	Fe(3+)-hydroxamate ABC transporter substrate-binding protein FhuD	no	0.45
18	LU632_RS08420		type III effector AvrB4-2	no	0.45
19	LU632_RS03645		tail fiber assembly protein	no	0.45
20	LU632_RS11755		DUF1378 family protein	no	0.44

Or look for negative cofitness