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  • Top cofit genes for LRK53_RS15705 from Rhodanobacter sp000427505 FW510-R12

    RNA polymerase factor sigma-54
    SEED: RNA polymerase sigma-54 factor RpoN
    KEGG: RNA polymerase sigma-54 factor

    Rank Hit Name Description Conserved? Cofitness  
    1 LRK53_RS13330 methylmalonyl-CoA mutase family protein no 0.78
    2 LRK53_RS08310 chorismate synthase 0.76 0.74
    3 LRK53_RS03105 3-isopropylmalate dehydratase small subunit 0.53 0.72
    4 LRK53_RS08695 amidophosphoribosyltransferase 0.92 0.71
    5 LRK53_RS02945 phosphoribosylamine--glycine ligase 0.91 0.71
    6 LRK53_RS09180 assimilatory sulfite reductase (NADPH) flavoprotein subunit 0.96 0.70
    7 LRK53_RS05295 phosphoribosylformylglycinamidine synthase 0.90 0.69
    8 LRK53_RS07545 argininosuccinate synthase 0.93 0.69
    9 LRK53_RS09205 cysteine synthase A 0.86 0.68
    10 LRK53_RS09845 asparagine synthase B 0.86 0.67
    11 LRK53_RS16490 phosphoenolpyruvate carboxylase 0.93 0.67
    12 LRK53_RS08460 histidinol dehydrogenase 0.93 0.67
    13 LRK53_RS17205 fumarylacetoacetate hydrolase family protein 0.68 0.66
    14 LRK53_RS04700 cystathionine gamma-synthase 0.92 0.66
    15 LRK53_RS09105 S-methyl-5-thioribose-1-phosphate isomerase no 0.66
    16 LRK53_RS06915 non-heme iron oxygenase ferredoxin subunit no 0.66
    17 LRK53_RS17940 hypothetical protein no 0.65
    18 LRK53_RS04485 sulfate adenylyltransferase subunit CysD 0.96 0.65
    19 LRK53_RS02375 shikimate dehydrogenase 0.78 0.65
    20 LRK53_RS09185 assimilatory sulfite reductase (NADPH) hemoprotein subunit 0.95 0.65

    Or look for negative cofitness