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Cofit
Protein
Homologs
Top cofit genes for HMPREF1181_RS02040 from
Bacteroides stercoris CC31F
RagB/SusD family nutrient uptake outer membrane protein
Rank
Hit
Name
Description
Conserved?
Cofitness
1
HMPREF1181
_RS10410
hypothetical protein
no
0.65
2
HMPREF1181
_RS07355
phage integrase SAM-like domain-containing protein
no
0.64
3
HMPREF1181
_RS02065
hypothetical protein
no
0.63
4
HMPREF1181
_RS07285
helix-turn-helix domain-containing protein
no
0.63
5
HMPREF1181
_RS03345
porin
no
0.63
6
HMPREF1181
_RS08450
hypothetical protein
no
0.63
7
HMPREF1181
_RS07120
VRR-NUC domain-containing protein
no
0.63
8
HMPREF1181
_RS08855
DUF1593 domain-containing protein
no
0.63
9
HMPREF1181
_RS01060
RNA polymerase sigma-70 factor
no
0.62
10
HMPREF1181
_RS02255
hypothetical protein
no
0.62
11
HMPREF1181
_RS10135
helix-turn-helix domain-containing protein
no
0.61
12
HMPREF1181
_RS00710
helix-turn-helix transcriptional regulator
no
0.60
13
HMPREF1181
_RS18045
hypothetical protein
no
0.60
14
HMPREF1181
_RS12495
response regulator transcription factor
no
0.60
15
HMPREF1181
_RS16345
HU family DNA-binding protein
no
0.59
16
HMPREF1181
_RS13425
SocA family protein
no
0.59
17
HMPREF1181
_RS14330
hypothetical protein
no
0.59
18
HMPREF1181
_RS16885
hypothetical protein
no
0.58
19
HMPREF1181
_RS15930
type VI secretion system contractile sheath protein TssC
no
0.58
20
HMPREF1181
_RS14800
heparinase II/III family protein
no
0.58
Or look for
negative cofitness