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  • Top cofit genes for HGI48_RS20005 from Dickeya dianthicola 67-19

    ATP-dependent DNA helicase RecQ
    SEED: ATP-dependent DNA helicase RecQ
    KEGG: ATP-dependent DNA helicase RecQ

    Rank Hit Name Description Conserved? Cofitness  
    1 HGI48_RS02715 chorismate lyase no 0.61
    2 HGI48_RS10095 YebC/PmpR family DNA-binding transcriptional regulator 0.44 0.57
    3 HGI48_RS03935 conjugal transfer protein TraG 0.45 0.57
    4 HGI48_RS07125 VirB3 family type IV secretion system protein no 0.54
    5 HGI48_RS16685 acireductone synthase no 0.54
    6 HGI48_RS03065 phage major tail tube protein no 0.54
    7 HGI48_RS14385 ABC transporter permease 0.34 0.52
    8 HGI48_RS02255 chorismate mutase no 0.52
    9 HGI48_RS08105 ABC transporter permease subunit no 0.51
    10 HGI48_RS09340 KTSC domain-containing protein no 0.50
    11 HGI48_RS14700 type II secretion system minor pseudopilin GspK no 0.47
    12 HGI48_RS07320 hydrogenase large subunit 0.17 0.46
    13 HGI48_RS06860 YjbH domain-containing protein 0.41 0.46
    14 HGI48_RS20750 cell division ATP-binding protein FtsE 0.33 0.45
    15 HGI48_RS07720 isopenicillin N synthase family oxygenase no 0.45
    16 HGI48_RS05385 MFS transporter 0.32 0.43
    17 HGI48_RS05460 HAMP domain-containing protein no 0.43
    18 HGI48_RS20110 transporter substrate-binding domain-containing protein no 0.43
    19 HGI48_RS07915 efflux RND transporter permease subunit 0.17 0.42
    20 HGI48_RS11435 aromatic amino acid DMT transporter YddG no 0.41

    Or look for negative cofitness