Top cofit genes for HGI48_RS05235 from Dickeya dianthicola 67-19

tyrosine-type recombinase/integrase
SEED: Integrase

Rank	Hit	Name	Description	Conserved?	Cofitness
1	HGI48_RS15225		polyphosphate kinase 1	no	0.74
2	HGI48_RS18375		inosine/xanthosine triphosphatase	no	0.66
3	HGI48_RS01760		LacI family DNA-binding transcriptional regulator	no	0.66
4	HGI48_RS08785		ATP-dependent RNA helicase RhlE	no	0.65
5	HGI48_RS05270		hypothetical protein	no	0.65
6	HGI48_RS05320		aspartyl/asparaginyl beta-hydroxylase domain-containing protein	no	0.64
7	HGI48_RS01650		3',5'-cyclic-AMP phosphodiesterase	no	0.64
8	HGI48_RS15785		diguanylate cyclase	no	0.63
9	HGI48_RS01985		helix-turn-helix transcriptional regulator	no	0.62
10	HGI48_RS21230		nitrogen regulation protein NR(II)	no	0.62
11	HGI48_RS02000		helix-turn-helix transcriptional regulator	no	0.62
12	HGI48_RS05730		SmdA family multidrug ABC transporter permease/ATP-binding protein	no	0.62
13	HGI48_RS05735		SmdB family multidrug efflux ABC transporter permease/ATP-binding protein	no	0.61
14	HGI48_RS11775		peptide antibiotic transporter SbmA	no	0.60
15	HGI48_RS15975		sulfate ABC transporter ATP-binding protein	no	0.60
16	HGI48_RS15980		sulfate ABC transporter permease subunit CysW	no	0.60
17	HGI48_RS19185		DUF1488 domain-containing protein	no	0.60
18	HGI48_RS03505		Cu(+)/Ag(+) efflux RND transporter permease subunit SilA	no	0.59
19	HGI48_RS07170		helix-turn-helix transcriptional regulator	no	0.59
20	HGI48_RS05870		cache domain-containing protein	no	0.58

Or look for negative cofitness