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Cofit
Top cofit genes for HER17_RS21985 from
Pectobacterium carotovorum WPP14
helix-turn-helix domain-containing protein
Rank
Hit
Name
Description
Conserved?
Cofitness
1
HER17
_RS19860
16S rRNA (cytidine(1402)-2'-O)-methyltransferase
no
0.70
2
HER17
_RS10535
Gfo/Idh/MocA family oxidoreductase
no
0.69
3
HER17
_RS04445
tRNA/rRNA methyltransferase
no
0.68
4
HER17
_RS09110
nitrate/nitrite two-component system sensor histidine kinase NarQ
no
0.68
5
HER17
_RS18625
tyrosine-type recombinase/integrase
no
0.68
6
HER17
_RS13220
protease inhibitor Inh/omp19 family protein
no
0.67
7
HER17
_RS16855
alpha/beta hydrolase
no
0.67
8
HER17
_RS12545
serine hydrolase
no
0.67
9
HER17
_RS16795
glycosyltransferase
no
0.65
10
HER17
_RS19880
divisome-associated lipoprotein YraP
no
0.65
11
HER17
_RS07740
DNA-binding transcriptional regulator
no
0.64
12
HER17
_RS08105
chemotaxis protein CheW
no
0.64
13
HER17
_RS20585
Sec-independent protein translocase subunit TatC
no
0.64
14
HER17
_RS11050
two-component system response regulator RssB
no
0.63
15
HER17
_RS00030
GFA family protein
no
0.63
16
HER17
_RS17915
23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF
no
0.63
17
HER17
_RS11575
EAL domain-containing protein
no
0.63
18
HER17
_RS21670
DUF4026 domain-containing protein
no
0.63
19
HER17
_RS02595
FtsH protease activity modulator HflK
no
0.63
20
HER17
_RS08100
chemotaxis protein CheA
no
0.62
Or look for
negative cofitness