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Cofit
Protein
Homologs
Top cofit genes for HER17_RS16135 from
Pectobacterium carotovorum WPP14
pectate lyase
SEED: Pectate lyase
Rank
Hit
Name
Description
Conserved?
Cofitness
1
HER17
_RS12630
hypothetical protein
no
0.83
2
HER17
_RS07325
ABC transporter ATP-binding protein
no
0.79
3
HER17
_RS17910
hypothetical protein
no
0.75
4
HER17
_RS20895
isoaspartyl peptidase/L-asparaginase
no
0.75
5
HER17
_RS19140
YjeO family protein
no
0.74
6
HER17
_RS18115
ATP-binding cassette domain-containing protein
no
0.73
7
HER17
_RS09455
glycoside hydrolase family 31 protein
no
0.73
8
HER17
_RS02835
acetate uptake transporter
0.38
0.73
9
HER17
_RS15800
SmdA family multidrug ABC transporter permease/ATP-binding protein
no
0.73
10
HER17
_RS03020
family 43 glycosylhydrolase
no
0.73
11
HER17
_RS13945
CDP-diacylglycerol diphosphatase
no
0.71
12
HER17
_RS20680
methyl-accepting chemotaxis protein
no
0.70
13
HER17
_RS09755
acyltransferase
no
0.70
14
HER17
_RS16190
alkylphosphonate utilization protein
no
0.70
15
HER17
_RS09010
cytochrome c nitrite reductase subunit NrfD
no
0.70
16
HER17
_RS09985
type III secretion system cytoplasmic ring protein SctQ
no
0.69
17
HER17
_RS12555
methionine ABC transporter ATP-binding protein
no
0.69
18
HER17
_RS17300
triose-phosphate isomerase
no
0.68
19
HER17
_RS09920
aminotransferase class III-fold pyridoxal phosphate-dependent enzyme
no
0.68
20
HER17
_RS14455
extracellular solute-binding protein
no
0.68
Or look for
negative cofitness