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Cofit
Top cofit genes for HER17_RS13725 from
Pectobacterium carotovorum WPP14
IS3 family transposase
Rank
Hit
Name
Description
Conserved?
Cofitness
1
HER17
_RS21715
hypothetical protein
no
0.78
2
HER17
_RS13265
hypothetical protein
no
0.76
3
HER17
_RS13855
threonine/serine dehydratase
no
0.73
4
HER17
_RS17980
sugar ABC transporter permease
no
0.69
5
HER17
_RS21570
low affinity potassium transporter Kup
no
0.69
6
HER17
_RS12320
DUF917 domain-containing protein
no
0.68
7
HER17
_RS16980
cytosine permease
no
0.67
8
HER17
_RS04460
multidrug efflux MFS transporter permease subunit EmrB
no
0.67
9
HER17
_RS18560
hypothetical protein
no
0.66
10
HER17
_RS21700
XRE family transcriptional regulator
no
0.66
11
HER17
_RS16660
TetR/AcrR family transcriptional regulator
no
0.65
12
HER17
_RS12345
replication-associated recombination protein A
no
0.65
13
HER17
_RS10600
cytochrome b562
no
0.64
14
HER17
_RS15340
autotransporter domain-containing protein
no
0.63
15
HER17
_RS11200
ATPase AAA
no
0.63
16
HER17
_RS20070
PTS IIA-like nitrogen regulatory protein PtsN
no
0.63
17
HER17
_RS11985
ABC transporter ATP-binding protein
no
0.62
18
HER17
_RS14025
AraC family transcriptional regulator
no
0.62
19
HER17
_RS12075
YcbJ family phosphotransferase
no
0.61
20
HER17
_RS08465
heat shock protein HspQ
no
0.61
Or look for
negative cofitness