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  • Top cofit genes for HER17_RS08030 from Pectobacterium carotovorum WPP14

    LuxR C-terminal-related transcriptional regulator

    Rank Hit Name Description Conserved? Cofitness  
    1 HER17_RS12550 ABC transporter permease no 0.78
    2 HER17_RS19990 outer membrane-stress sensor serine endopeptidase DegS no 0.72
    3 HER17_RS00380 cellulose biosynthesis protein BcsE no 0.70
    4 HER17_RS13010 hypothetical protein no 0.70
    5 HER17_RS02740 methyl-accepting chemotaxis protein no 0.70
    6 HER17_RS08390 betaine-aldehyde dehydrogenase no 0.68
    7 HER17_RS19785 ketose-bisphosphate aldolase no 0.68
    8 HER17_RS00370 cellulose synthase operon protein YhjQ no 0.68
    9 HER17_RS05630 glutathione S-transferase no 0.67
    10 HER17_RS03310 serine hydrolase no 0.66
    11 HER17_RS21760 CsgG/HfaB family protein no 0.65
    12 HER17_RS03470 metal ABC transporter substrate-binding protein no 0.65
    13 HER17_RS07590 hypothetical protein no 0.65
    14 HER17_RS15670 bifunctional UDP-sugar hydrolase/5'-nucleotidase UshA no 0.64
    15 HER17_RS11445 alpha/beta hydrolase no 0.64
    16 HER17_RS18980 putative Ig domain-containing protein no 0.64
    17 HER17_RS03355 DUF3060 domain-containing protein no 0.64
    18 HER17_RS05035 hypothetical protein no 0.63
    19 HER17_RS16820 outer membrane beta-barrel protein no 0.63
    20 HER17_RS12210 methyl-accepting chemotaxis protein no 0.63

    Or look for negative cofitness