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Cofit
Protein
Homologs
Top cofit genes for HEPCGN_04005 from
Escherichia coli ECOR38
dsrB
:
protein DsrB
SEED: DsrB protein
Rank
Hit
Name
Description
Conserved?
Cofitness
1
HEPCGN
_24195
phoQ
two-component system sensor histidine kinase PhoQ
0.68
0.60
2
HEPCGN
_07110
tsx
nucleoside-specific channel-forming protein Tsx
0.58
0.59
3
HEPCGN
_06830
tomB
Hha toxicity modulator TomB
0.35
0.54
4
HEPCGN
_03920
hiuH
hydroxyisourate hydrolase
0.17
0.51
5
HEPCGN
_08795
rluA
bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA
0.56
0.51
6
HEPCGN
_15900
mrcA
peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA
no
0.51
7
HEPCGN
_20610
mltF
membrane-bound lytic murein transglycosylase MltF
no
0.50
8
HEPCGN
_21505
nupC
nucleoside permease NupC
0.60
0.49
9
HEPCGN
_10675
dsbD
protein-disulfide reductase DsbD
0.27
0.49
10
HEPCGN
_09825
fecR
fec operon regulator FecR
no
0.49
11
HEPCGN
_12385
hslU
HslU--HslV peptidase ATPase subunit
no
0.49
12
HEPCGN
_20980
upp
uracil phosphoribosyltransferase
0.57
0.48
13
HEPCGN
_17105
lpoA
penicillin-binding protein activator LpoA
0.22
0.48
14
HEPCGN
_06955
tig
trigger factor
0.73
0.48
15
HEPCGN
_15095
hmsP
biofilm formation regulator HmsP
0.38
0.47
16
HEPCGN
_20985
uraA
uracil permease
no
0.46
17
HEPCGN
_12390
menA
1,4-dihydroxy-2-naphthoate polyprenyltransferase
0.27
0.45
18
HEPCGN
_25970
smrA
DNA endonuclease SmrA
no
0.45
19
HEPCGN
_05770
purR
HTH-type transcriptional repressor PurR
no
0.45
20
HEPCGN
_15905
hofM
DNA utilization protein HofM
no
0.45
Or look for
negative cofitness