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  • Top cofit genes for HEPCGN_03445 from Escherichia coli ECOR38

    transcriptional regulator
    SEED: Co-activator of prophage gene expression IbrB

    Rank Hit Name Description Conserved? Cofitness  
    1 HEPCGN_08445 speE polyamine aminopropyltransferase no 0.52
    2 HEPCGN_18975 dpaL diaminopropionate ammonia-lyase 0.32 0.50
    3 HEPCGN_22885 cspD cold shock-like protein CspD no 0.45
    4 HEPCGN_10745 pgtA two-component system response regulator PgtA no 0.45
    5 HEPCGN_14805 malS alpha-amylase no 0.45
    6 HEPCGN_02970 udk uridine kinase no 0.45
    7 HEPCGN_26285 mcbR colanic acid/biofilm transcriptional regulator McbR no 0.44
    8 HEPCGN_05950 ydgT transcription modulator YdgT no 0.43
    9 HEPCGN_01400 glmE methylaspartate mutase subunit E no 0.43
    10 HEPCGN_26220 rlhA 23S rRNA 5-hydroxycytidine C2501 synthase no 0.43
    11 HEPCGN_18750 argP DNA-binding transcriptional regulator ArgP no 0.42
    12 HEPCGN_16915 dacB serine-type D-Ala-D-Ala carboxypeptidase no 0.41
    13 HEPCGN_06500 ylbE Uncharacterized protein YlbE no 0.40
    14 HEPCGN_12990 ysgA Putative carboxymethylenebutenolidase no 0.40
    15 HEPCGN_09425 btsT pyruvate/proton symporter BtsT no 0.40
    16 HEPCGN_02640 btsR two-component system response regulator BtsR no 0.39
    17 HEPCGN_03860 gp18 phage minor tail protein L no 0.39
    18 HEPCGN_05770 purR HTH-type transcriptional repressor PurR no 0.39
    19 HEPCGN_17850 gpr L-glyceraldehyde 3-phosphate reductase no 0.39
    20 HEPCGN_06830 tomB Hha toxicity modulator TomB no 0.39

    Or look for negative cofitness