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  • Top cofit genes for HEPCGN_00425 from Escherichia coli ECOR38

    AlpA family transcriptional regulator
    SEED: COG3311: Predicted transcriptional regulator

    Rank Hit Name Description Conserved? Cofitness  
    1 HEPCGN_10555 mscM miniconductance mechanosensitive channel MscM no 0.52
    2 HEPCGN_15620 ggt gamma-glutamyltransferase no 0.46
    3 HEPCGN_21215 eutE Acetaldehyde dehydrogenase (acetylating) EutE no 0.46
    4 HEPCGN_14020 restriction endonuclease subunit M no 0.45
    5 HEPCGN_06135 dmsD Tat proofreading chaperone DmsD no 0.44
    6 HEPCGN_25640 lapA lipopolysaccharide assembly protein LapA no 0.43
    7 HEPCGN_26885 eamA O-acetylserine/cysteine exporter no 0.43
    8 HEPCGN_13765 dgoK 2-dehydro-3-deoxygalactonokinase no 0.43
    9 HEPCGN_13480 viaA ATPase RavA stimulator ViaA no 0.42
    10 HEPCGN_19440 ppnN nucleotide 5'-monophosphate nucleosidase no 0.41
    11 HEPCGN_06185 rspA starvation-sensing protein RspA no 0.41
    12 HEPCGN_25940 abgB p-aminobenzoyl-glutamate hydrolase subunit B no 0.40
    13 HEPCGN_09630 fimB type 1 fimbria switch DNA invertase FimB no 0.39
    14 HEPCGN_14005 yicL carboxylate/amino acid/amine transporter no 0.39
    15 HEPCGN_11720 hypothetical protein no 0.39
    16 HEPCGN_06205 DUF5051 domain-containing protein no 0.39
    17 HEPCGN_24175 phage terminase small subunit P27 family no 0.38
    18 HEPCGN_21650 emrY multidrug efflux MFS transporter permease subunit EmrY no 0.38
    19 HEPCGN_17365 pilus assembly protein CblD no 0.38
    20 HEPCGN_26925 dcp peptidyl-dipeptidase Dcp no 0.38

    Or look for negative cofitness