Top cofit genes for GFF990 from Variovorax sp. SCN45

LSU rRNA pseudouridine(2605) synthase (EC 5.4.99.22)
SEED: Ribosomal large subunit pseudouridine synthase B (EC 4.2.1.70)
KEGG: ribosomal large subunit pseudouridine synthase B

Rank	Hit	Name	Description	Conserved?	Cofitness
1	GFF4454		Exoribonuclease II (EC 3.1.13.1)	no	0.79
2	GFF5384		Proteins containing SET domain	no	0.77
3	GFF5465		Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Vanillate O-demethylase oxidoreductase (EC 1.14.13.-)	no	0.77
4	GFF988		LSU rRNA pseudouridine(1911/1915/1917) synthase (EC 5.4.99.23)	no	0.77
5	GFF3960		3'-to-5' oligoribonuclease (orn)	0.63	0.76
6	GFF4398		Transcriptional regulator, AcrR family	no	0.75
7	GFF2801		Homoserine dehydrogenase (EC 1.1.1.3)	no	0.74
8	GFF2523		Peptide chain release factor N(5)-glutamine methyltransferase (EC 2.1.1.297)	no	0.74
9	GFF4437		Low-complexity acidic protein, XCC2875 type	no	0.74
10	GFF4557		Dihydroorotase (EC 3.5.2.3)	no	0.73
11	GFF403		Inactive (p)ppGpp 3'-pyrophosphohydrolase domain / GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I	no	0.73
12	GFF2522		Glutaredoxin-related protein	no	0.73
13	GFF3867		Translation elongation factor LepA	0.74	0.72
14	GFF3845		Ribonuclease E (EC 3.1.26.12)	no	0.72
15	GFF4383		hypothetical protein	no	0.72
16	GFF2455		Transcriptional regulator RutR of pyrimidine catabolism (TetR family)	no	0.72
17	GFF1917		ATP-dependent RNA helicase Bcep18194_A5658	0.55	0.72
18	GFF5876		Nitrogen regulation protein NtrY (EC 2.7.3.-)	no	0.72
19	GFF3599		Rhodanese-related sulfurtransferase	no	0.72
20	GFF2141		GTP-binding and nucleic acid-binding protein YchF	0.57	0.71

Or look for negative cofitness