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  • Top cofit genes for GFF984 from Variovorax sp. SCN45

    Protein phosphatase 2C-like
    SEED: Protein phosphatase 2C-like

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF6290 RNA polymerase sigma-54 factor RpoN no 0.66
    2 GFF3743 Twitching motility protein PilT 0.43 0.64
    3 GFF588 putative membrane protein no 0.62
    4 GFF5531 hypothetical protein no 0.62
    5 GFF6075 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB 0.47 0.62
    6 GFF5320 Type IV pilus biogenesis protein PilN 0.46 0.62
    7 GFF5414 hypothetical protein no 0.62
    8 GFF5415 Type IV fimbrial biogenesis protein PilV no 0.62
    9 GFF2519 FIG016425: Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) 0.45 0.61
    10 GFF5321 Type IV pilus biogenesis protein PilO 0.45 0.61
    11 GFF5416 Type IV fimbrial biogenesis protein PilW no 0.61
    12 GFF4485 FIG00715336: hypothetical protein 0.44 0.61
    13 GFF5319 Type IV pilus biogenesis protein PilM 0.45 0.61
    14 GFF5128 hypothetical protein no 0.60
    15 GFF5322 Type IV pilus biogenesis protein PilP 0.45 0.60
    16 GFF5418 Type IV fimbrial biogenesis protein PilY1 no 0.60
    17 GFF2627 Chorismate synthase (EC 4.2.3.5) no 0.60
    18 GFF2379 Serine/threonine protein kinase 0.44 0.60
    19 GFF2510 Type IV fimbrial assembly, ATPase PilB 0.45 0.60
    20 GFF2508 Leader peptidase (Prepilin peptidase) (EC 3.4.23.43) / N-methyltransferase (EC 2.1.1.-) 0.48 0.60

    Or look for negative cofitness