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Cofit
Protein
Homologs
Top cofit genes for GFF984 from
Variovorax sp. SCN45
Protein phosphatase 2C-like
SEED: Protein phosphatase 2C-like
Rank
Hit
Name
Description
Conserved?
Cofitness
1
GFF6290
RNA polymerase sigma-54 factor RpoN
no
0.66
2
GFF3743
Twitching motility protein PilT
0.46
0.64
3
GFF588
putative membrane protein
no
0.62
4
GFF5531
hypothetical protein
no
0.62
5
GFF6075
Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB
0.43
0.62
6
GFF5320
Type IV pilus biogenesis protein PilN
0.43
0.62
7
GFF5414
hypothetical protein
no
0.62
8
GFF5415
Type IV fimbrial biogenesis protein PilV
no
0.62
9
GFF2519
FIG016425: Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)
0.41
0.61
10
GFF5321
Type IV pilus biogenesis protein PilO
0.41
0.61
11
GFF5416
Type IV fimbrial biogenesis protein PilW
no
0.61
12
GFF4485
FIG00715336: hypothetical protein
0.40
0.61
13
GFF5319
Type IV pilus biogenesis protein PilM
0.40
0.61
14
GFF5128
hypothetical protein
no
0.60
15
GFF5322
Type IV pilus biogenesis protein PilP
0.40
0.60
16
GFF5418
Type IV fimbrial biogenesis protein PilY1
no
0.60
17
GFF2627
Chorismate synthase (EC 4.2.3.5)
no
0.60
18
GFF2379
Serine/threonine protein kinase
0.39
0.60
19
GFF2510
Type IV fimbrial assembly, ATPase PilB
0.40
0.60
20
GFF2508
Leader peptidase (Prepilin peptidase) (EC 3.4.23.43) / N-methyltransferase (EC 2.1.1.-)
0.43
0.60
Or look for
negative cofitness