Top cofit genes for GFF96 from Variovorax sp. SCN45

RNA polymerase ECF-type sigma factor
SEED: RNA polymerase sigma-70 factor, ECF subfamily

Rank	Hit	Name	Description	Conserved?	Cofitness
1	GFF5122		AAA+ ATPase superfamily protein YifB/ComM, associated with DNA recombination	no	0.62
2	GFF2248		Transcriptional regulatory protein RtcR	no	0.61
3	GFF2231		3-oxoadipate CoA-transferase subunit B (EC 2.8.3.6)	no	0.57
4	GFF5440		RNA polymerase ECF-type sigma factor	no	0.57
5	GFF23		no description	no	0.56
6	GFF839		Retron-type RNA-directed DNA polymerase (EC 2.7.7.49)	no	0.56
7	GFF1832		TRAP transporter solute receptor, unknown substrate 3	no	0.55
8	GFF825		no description	no	0.54
9	GFF5767		Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61)	no	0.53
10	GFF3866		HtrA protease/chaperone protein	no	0.53
11	GFF2650		hypothetical protein	no	0.52
12	GFF5200		L-arabonate dehydratase (EC 4.2.1.25)	no	0.51
13	GFF17		hypothetical protein	no	0.51
14	GFF1989		MBL-fold metallo-hydrolase superfamily	no	0.51
15	GFF5805		Putative transmembrane protein	no	0.51
16	GFF6323		Benzoate transport protein	no	0.51
17	GFF1225		Glycine/D-amino acid oxidases (deaminating)	no	0.51
18	GFF5140		no description	no	0.50
19	GFF3225		hypothetical protein	no	0.48
20	GFF2474		Two-component transcriptional response regulator SMc02366, LuxR family	no	0.48

Or look for negative cofitness