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  • Top cofit genes for GFF906 from Variovorax sp. SCN45

    Transcriptional regulator
    SEED: 4-carboxymuconolactone decarboxylase (EC 4.1.1.44)

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF3181 FIG005069: Hypothetical protein no 0.54
    2 GFF1693 Acetoacetyl-CoA reductase (EC 1.1.1.36) no 0.53
    3 GFF3798 FIG00932573: hypothetical protein no 0.52
    4 GFF3070 no description no 0.51
    5 GFF4561 Domain often clustered or fused with uracil-DNA glycosylase / Uracil-DNA glycosylase, putative family 6 (EC 3.2.2.27) no 0.50
    6 GFF4928 hypothetical protein no 0.50
    7 GFF6469 TRAP-type transport system, large permease component, predicted N-acetylneuraminate transporter no 0.49
    8 GFF3956 no description no 0.49
    9 GFF2395 D-threo-3-hydroxyaspartate ammonia-lyase (EC 4.3.1.-) no 0.49
    10 GFF2004 no description no 0.47
    11 GFF6572 Conjugative transfer protein TrbG no 0.47
    12 GFF4792 PhnB protein no 0.47
    13 GFF3136 no description no 0.46
    14 GFF3131 VgrG protein no 0.46
    15 GFF1983 D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase (EC 3.1.3.82); Histidinol-phosphatase (EC 3.1.3.15) no 0.45
    16 GFF5631 DNA-binding domain of ModE no 0.45
    17 GFF3353 Branched-chain amino acid ABC transporter, ATP-binding protein LivF (TC 3.A.1.4.1) no 0.44
    18 GFF174 ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines) no 0.44
    19 GFF4292 no description no 0.44
    20 GFF2419 putative amidase no 0.44

    Or look for negative cofitness