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  • Top cofit genes for GFF881 from Variovorax sp. SCN45

    Transcriptional regulator ligR, LysR family
    SEED: Transcriptional regulator ligR, LysR family

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF3704 FIG00536957: hypothetical protein no 0.68
    2 GFF1963 Transcriptional regulator, AsnC family 0.26 0.67
    3 GFF6623 Esterase/lipase no 0.64
    4 GFF2723 Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit no 0.62
    5 GFF5743 Flagellar motor switch protein FliM 0.39 0.62
    6 GFF5600 no description no 0.59
    7 GFF4873 no description no 0.56
    8 GFF584 Tripartite tricarboxylate transporter TctA family no 0.56
    9 GFF2948 salicylate esterase no 0.55
    10 GFF2951 Arsenate reductase (EC 1.20.4.1) glutaredoxin-coupled, glutaredoxin-like family no 0.54
    11 GFF5785 FIG00931285: hypothetical protein no 0.54
    12 GFF4092 Copper tolerance protein no 0.53
    13 GFF3372 hypothetical protein no 0.52
    14 GFF101 Phosphate-binding DING protein (related to PstS) no 0.51
    15 GFF4378 HYPOTHETICAL/UNKNOWN PROTEIN no 0.51
    16 GFF2107 no description no 0.51
    17 GFF1990 Transcriptional regulator, MerR family 0.39 0.50
    18 GFF856 no description no 0.50
    19 GFF1896 Two-component transcriptional response regulator, LuxR family no 0.50
    20 GFF2438 Ferrichrome-iron receptor no 0.49

    Or look for negative cofitness