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    • Top cofit genes for GFF880 from Variovorax sp. SCN45

    conserved hypothetical protein
    SEED: conserved hypothetical protein

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF1663 Isocitrate lyase (EC 4.1.3.1) no 0.52
    2 GFF5395 Glutamine ABC transporter, ATP-binding protein GlnQ no 0.50
    3 GFF6775 ABC transporter, permease protein no 0.44
    4 GFF1129 Cardiolipin synthase (EC 2.7.8.-) phosphatidylethanolamine-utilizing, bacterial type ClsC no 0.44
    5 GFF3948 Acetyltransferase, GNAT family no 0.43
    6 GFF4555 Putative transmembrane protein no 0.43
    7 GFF6122 ABC-type antimicrobial peptide transport system, permease component no 0.42
    8 GFF3724 Efflux transport system, outer membrane factor (OMF) lipoprotein no 0.42
    9 GFF142 Oxidoreductase no 0.41
    10 GFF1516 TRAP-type C4-dicarboxylate transport system, large permease component no 0.41
    11 GFF5453 Alkaline phosphatase (EC 3.1.3.1) no 0.41
    12 GFF4744 Permease of the drug/metabolite transporter (DMT) superfamily no 0.41
    13 GFF5547 Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54) / Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) no 0.41
    14 GFF4547 no description no 0.40
    15 GFF3829 hypothetical protein no 0.40
    16 GFF2481 Urease accessory protein UreF no 0.40
    17 GFF2121 Type IV fimbrial biogenesis protein PilY1 no 0.40
    18 GFF6343 no description no 0.40
    19 GFF3026 KEGG: type VI secretion system protein no 0.40
    20 GFF4722 ABC transporter, substrate-binding protein (cluster 1, maltose/g3p/polyamine/iron) no 0.40

    Or look for negative cofitness