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Cofit
Protein
Homologs
Top cofit genes for GFF88 from
Sphingobium sp. HT1-2
Radical SAM domain protein
SEED: Radical SAM domain protein
Rank
Hit
Name
Description
Conserved?
Cofitness
1
GFF3427
Transcriptional regulator, LysR family
no
0.75
2
GFF1197
hypothetical protein
no
0.75
3
GFF651
hypothetical protein
no
0.71
4
GFF1459
hypothetical protein
no
0.70
5
GFF369
Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13)
no
0.70
6
GFF3599
Anhydro-N-acetylmuramic acid kinase (EC 2.7.1.170)
0.41
0.68
7
GFF4033
hypothetical protein
no
0.67
8
GFF752
Peptidase, M23/M37 family
no
0.67
9
GFF2425
Intramembrane protease RasP/YluC, implicated in cell division based on FtsL cleavage
no
0.66
10
GFF310
ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate)
no
0.65
11
GFF4737
Efflux ABC transporter, permease protein
no
0.65
12
GFF797
Protein tyrosine phosphatase
no
0.65
13
GFF4457
hypothetical protein
no
0.64
14
GFF2374
P-hydroxybenzoate hydroxylase (EC 1.14.13.2)
0.34
0.64
15
GFF1405
hypothetical protein
no
0.63
16
GFF553
2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (EC 3.7.1.-)
no
0.63
17
GFF848
hypothetical protein
no
0.62
18
GFF450
SAM-dependent methyltransferase
no
0.62
19
GFF1499
Undecaprenyl-phosphate galactosephosphotransferase (EC 2.7.8.6)
no
0.62
20
GFF1164
hypothetical protein
no
0.62
Or look for
negative cofitness