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  • Top cofit genes for GFF825 from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

    RNA-binding protein Hfq
    SEED: RNA-binding protein Hfq
    KEGG: host factor-I protein

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF4158 tmRNA-binding protein SmpB 0.32 0.72
    2 GFF192 'Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41)' transl_table=11 0.45 0.71
    3 GFF4852 Serine transporter no 0.71
    4 GFF183 RNA polymerase associated protein RapA (EC 3.6.1.-) 0.76 0.71
    5 GFF3363 Flagellar hook-associated protein FlgK no 0.70
    6 GFF4409 YbbM seven transmembrane helix protein no 0.69
    7 GFF3353 Flagellar basal-body P-ring formation protein FlgA 0.57 0.68
    8 GFF2279 Copper sensory histidine kinase CpxA no 0.67
    9 GFF2585 SrfB no 0.66
    10 GFF2390 16S rRNA (cytosine(967)-C(5))-methyltransferase (EC 2.1.1.176) ## SSU rRNA m5C967 0.61 0.66
    11 GFF4028 Flagellar hook-associated protein FliD no 0.65
    12 GFF4029 Flagellar biosynthesis protein FliC no 0.65
    13 GFF828 HflC protein 0.72 0.64
    14 GFF3531 Vitamin B12 ABC transporter, ATPase component BtuD 0.34 0.64
    15 GFF2772 FIG002082: Protein SirB2 no 0.64
    16 GFF4166 Hemolysins and related proteins containing CBS domains no 0.64
    17 GFF827 HflK protein 0.75 0.63
    18 GFF136 FIG002842: hypothetical protein no 0.63
    19 GFF4012 Flagellar biosynthesis protein FliL 0.56 0.63
    20 GFF4352 Cell division trigger factor (EC 5.2.1.8) 0.41 0.63

    Or look for negative cofitness