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Cofit
Protein
Homologs
Top cofit genes for GFF820 from
Variovorax sp. SCN45
Intracellular protease
SEED: ThiJ/PfpI family protein
Rank
Hit
Name
Description
Conserved?
Cofitness
1
GFF2118
hypothetical protein
no
0.51
2
GFF1274
Glutamate racemase (EC 5.1.1.3)
no
0.50
3
GFF6330
BUG/TctC family periplasmic protein
no
0.49
4
GFF3113
Methionine ABC transporter permease protein
no
0.49
5
GFF1982
no description
no
0.49
6
GFF4851
Coupling protein VirD4, ATPase required for T-DNA transfer
no
0.48
7
GFF5301
ABC transporter, ATP-binding protein (cluster 1, maltose/g3p/polyamine/iron); ABC transporter, ATP-binding protein (cluster 10, nitrate/sulfonate/bicarbonate)
no
0.47
8
GFF699
ABC transporter, ATP-binding protein 2 (cluster 4, leucine/isoleucine/valine/benzoate)
no
0.46
9
GFF5475
Uncharacterized MFS-type transporter
no
0.46
10
GFF405
3-hydroxybutyrate dehydrogenase (EC 1.1.1.30)
no
0.45
11
GFF5010
Geranyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.5)
no
0.45
12
GFF4943
Chloride channel protein
no
0.45
13
GFF485
hypothetical protein
no
0.44
14
GFF1611
no description
no
0.44
15
GFF6225
ABC transporter, substrate-binding protein (cluster 12, methionine/phosphonates)
no
0.43
16
GFF1588
Serine phosphatase RsbU, regulator of sigma subunit
no
0.43
17
GFF6131
ABC transporter, ATP-binding protein 2 (cluster 4, leucine/isoleucine/valine/benzoate)
no
0.43
18
GFF4941
Gfa-like protein
no
0.42
19
GFF6718
no description
no
0.42
20
GFF7029
hypothetical protein
no
0.41
Or look for
negative cofitness