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  • Top cofit genes for GFF820 from Variovorax sp. SCN45

    Intracellular protease
    SEED: ThiJ/PfpI family protein

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF2118 hypothetical protein no 0.51
    2 GFF1274 Glutamate racemase (EC 5.1.1.3) no 0.50
    3 GFF6330 BUG/TctC family periplasmic protein no 0.49
    4 GFF3113 Methionine ABC transporter permease protein no 0.49
    5 GFF1982 no description no 0.49
    6 GFF4851 Coupling protein VirD4, ATPase required for T-DNA transfer no 0.48
    7 GFF5301 ABC transporter, ATP-binding protein (cluster 1, maltose/g3p/polyamine/iron); ABC transporter, ATP-binding protein (cluster 10, nitrate/sulfonate/bicarbonate) no 0.47
    8 GFF699 ABC transporter, ATP-binding protein 2 (cluster 4, leucine/isoleucine/valine/benzoate) no 0.46
    9 GFF5475 Uncharacterized MFS-type transporter no 0.46
    10 GFF405 3-hydroxybutyrate dehydrogenase (EC 1.1.1.30) no 0.45
    11 GFF5010 Geranyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.5) no 0.45
    12 GFF4943 Chloride channel protein no 0.45
    13 GFF485 hypothetical protein no 0.44
    14 GFF1611 no description no 0.44
    15 GFF6225 ABC transporter, substrate-binding protein (cluster 12, methionine/phosphonates) no 0.43
    16 GFF1588 Serine phosphatase RsbU, regulator of sigma subunit no 0.43
    17 GFF6131 ABC transporter, ATP-binding protein 2 (cluster 4, leucine/isoleucine/valine/benzoate) no 0.43
    18 GFF4941 Gfa-like protein no 0.42
    19 GFF6718 no description no 0.42
    20 GFF7029 hypothetical protein no 0.41

    Or look for negative cofitness