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  • Top cofit genes for GFF801 from Variovorax sp. SCN45

    Murein hydrolase activator NlpD
    SEED: Lipoprotein NlpD

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF476 InterPro IPR005134 COGs COG2862 no 0.60
    2 GFF4365 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) no 0.60
    3 GFF812 Putative reductase no 0.55
    4 GFF358 hypothetical protein no 0.54
    5 GFF5853 Type I secretion system ATPase, LssB family LapB no 0.54
    6 GFF1074 no description no 0.54
    7 GFF4804 tRNA threonylcarbamoyladenosine biosynthesis protein TsaE no 0.53
    8 GFF3414 Fumarylacetoacetase (EC 3.7.1.2) no 0.52
    9 GFF959 Phage holin no 0.52
    10 GFF6808 Peroxiredoxin OsmC (EC 1.11.1.15) no 0.51
    11 GFF895 Putative transcriptional regulatory protein no 0.51
    12 GFF5218 ABC transporter, ATP-binding protein (cluster 3, basic aa/glutamine/opines) no 0.51
    13 GFF6006 BUG/TctC family periplasmic protein no 0.50
    14 GFF4563 Ferredoxin, 2Fe-2S no 0.50
    15 GFF5396 ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) no 0.50
    16 GFF4881 HYPOTHETICAL/UNKNOWN PROTEIN no 0.50
    17 GFF3301 Lignostilbene-alpha,beta-dioxygenase and related enzymes no 0.50
    18 GFF3432 L-carnitine dehydratase/bile acid-inducible protein F no 0.50
    19 GFF5620 ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate) no 0.49
    20 GFF3155 Gluconolactonase (EC 3.1.1.17) no 0.48

    Or look for negative cofitness