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  • Top cofit genes for GFF791 from Variovorax sp. SCN45

    RNA polymerase sigma factor RpoE
    SEED: RNA polymerase, sigma-24 subunit, ECF subfamily
    KEGG: RNA polymerase sigma-70 factor, ECF subfamily

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF2979 Glutathione S-transferase (EC 2.5.1.18) no 0.53
    2 GFF36 Similar to Agmatine deiminase no 0.52
    3 GFF7265 hypothetical protein, not 6-phosphogluconolactonase no 0.50
    4 GFF1243 transglutaminase, N-terminal domain protein no 0.49
    5 GFF1320 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) no 0.49
    6 GFF7359 High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) no 0.49
    7 GFF7158 Pirin no 0.47
    8 GFF1027 Ribonuclease BN no 0.47
    9 GFF4159 no description no 0.47
    10 GFF1253 ABC transporter, substrate-binding protein (cluster 10, nitrate/sulfonate/bicarbonate) no 0.46
    11 GFF1124 no description no 0.46
    12 GFF2558 DNA protection during starvation protein no 0.45
    13 GFF3130 hypothetical protein no 0.45
    14 GFF1128 Alkyl hydroperoxide reductase subunit C-like protein no 0.45
    15 GFF562 Type IV pilus biogenesis protein PilE no 0.44
    16 GFF6171 Na(+) H(+) antiporter subunit D 0.51 0.43
    17 GFF1055 Fumarylacetoacetate hydrolase family protein no 0.43
    18 GFF6751 Oxidoreductase, short-chain dehydrogenase/reductase family no 0.43
    19 GFF613 hypothetical protein no 0.43
    20 GFF4021 Uncharacterized MFS-type transporter no 0.43

    Or look for negative cofitness