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  • Top cofit genes for GFF778 from Variovorax sp. SCN45

    Channel-forming transporter/cytolysins activator of TpsB family
    SEED: Channel-forming transporter/cytolysins activator of TpsB family

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF1099 Na+-driven multidrug efflux pump no 0.57
    2 GFF2981 no description no 0.55
    3 GFF2356 RNase adapter protein RapZ no 0.55
    4 GFF477 Transcriptional regulator, LysR family no 0.53
    5 GFF3825 Autolysin sensor kinase (EC 2.7.3.-) no 0.52
    6 GFF2153 type IV pili signal transduction protein PilI no 0.52
    7 GFF6075 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB 0.28 0.51
    8 GFF7313 hypothetical protein no 0.50
    9 GFF1569 BUG/TctC family periplasmic protein no 0.50
    10 GFF2510 Type IV fimbrial assembly, ATPase PilB no 0.50
    11 GFF1941 hypothetical protein no 0.50
    12 GFF4432 Two-component system response regulator protein no 0.50
    13 GFF5418 Type IV fimbrial biogenesis protein PilY1 no 0.49
    14 GFF993 Type IV pilus biogenesis protein PilF no 0.49
    15 GFF5319 Type IV pilus biogenesis protein PilM no 0.49
    16 GFF4723 ABC transporter, ATP-binding protein (cluster 1, maltose/g3p/polyamine/iron); ABC transporter, ATP-binding protein (cluster 10, nitrate/sulfonate/bicarbonate) no 0.49
    17 GFF4658 KEGG: RNA polymerase sigma-70 factor, ECF subfamily no 0.49
    18 GFF5417 hypothetical protein no 0.49
    19 GFF2151 twitching motility protein PilG no 0.49
    20 GFF1743 Transcriptional regulator, LysR family no 0.49

    Or look for negative cofitness