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  • Top cofit genes for GFF768 from Variovorax sp. SCN45

    Trehalose synthase (EC 5.4.99.16)
    SEED: Trehalose synthase (EC 5.4.99.16)
    KEGG: maltose alpha-D-glucosyltransferase

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF325 Nucleoside ABC transporter, substrate-binding protein no 0.69
    2 GFF6138 TRAP dicarboxylate transporter, DctQ subunit, unknown substrate 6 no 0.62
    3 GFF5401 2-keto-3-deoxy-L-fuconate dehydrogenase no 0.61
    4 GFF4989 Transcriptional regulator, LysR family no 0.61
    5 GFF452 Chloride channel protein no 0.59
    6 GFF5356 Aldose 1-epimerase no 0.58
    7 GFF3307 FIG01161751: hypothetical protein no 0.58
    8 GFF5261 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) 0.49 0.57
    9 GFF6923 Acetate permease ActP (cation/acetate symporter) 0.48 0.56
    10 GFF5604 D-xylose ABC transporter, permease protein XylH no 0.56
    11 GFF5603 D-xylose ABC transporter, substrate-binding protein XylF no 0.55
    12 GFF2183 Outer membrane component of TAM transport system no 0.54
    13 GFF3838 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) 0.42 0.53
    14 GFF1232 Uncharacterized protein conserved in bacteria no 0.52
    15 GFF5767 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) 0.36 0.52
    16 GFF6335 no description no 0.51
    17 GFF4766 identified by similarity to GB:AAK22812.1; match to protein family HMM PF06676 no 0.50
    18 GFF2672 ABC transporter, ATP-binding protein no 0.50
    19 GFF3191 no description no 0.50
    20 GFF1057 hypothetical protein no 0.50

    Or look for negative cofitness