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  • Top cofit genes for GFF755 from Variovorax sp. SCN45

    Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB
    SEED: Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF5145 hypothetical protein no 0.65
    2 GFF2379 Serine/threonine protein kinase no 0.65
    3 GFF1569 BUG/TctC family periplasmic protein no 0.65
    4 GFF4485 FIG00715336: hypothetical protein no 0.65
    5 GFF2508 Leader peptidase (Prepilin peptidase) (EC 3.4.23.43) / N-methyltransferase (EC 2.1.1.-) no 0.62
    6 GFF4279 3-phenylpropionate dioxygenase alpha subunit (EC 1.14.1.-) no 0.61
    7 GFF5320 Type IV pilus biogenesis protein PilN no 0.61
    8 GFF5325 3-dehydroquinate synthase (EC 4.2.3.4) no 0.61
    9 GFF5322 Type IV pilus biogenesis protein PilP no 0.61
    10 GFF3826 Response regulator receiver:LytTr DNA-binding region no 0.60
    11 GFF3825 Autolysin sensor kinase (EC 2.7.3.-) no 0.60
    12 GFF5490 Uncharacterized protein with LysM domain, COG1652 no 0.60
    13 GFF5412 no description no 0.60
    14 GFF2510 Type IV fimbrial assembly, ATPase PilB no 0.60
    15 GFF2151 twitching motility protein PilG no 0.60
    16 GFF5323 Type IV pilus biogenesis protein PilQ 0.21 0.59
    17 GFF5321 Type IV pilus biogenesis protein PilO no 0.59
    18 GFF2509 Type IV fimbrial assembly protein PilC no 0.59
    19 GFF5057 Peptidoglycan D,D-transpeptidase MrdA (EC 3.4.16.4) no 0.59
    20 GFF993 Type IV pilus biogenesis protein PilF no 0.59

    Or look for negative cofitness