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  • Top cofit genes for GFF74 from Variovorax sp. SCN45

    Transcriptional regulator, LysR family
    SEED: Transcriptional regulator, LysR family

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF5096 similar to protocatechuate 4,5-dioxygenase beta chain no 0.61
    2 GFF2368 ABC transporter, substrate-binding protein (cluster 7, di-/tri-carboxylate) no 0.55
    3 GFF1760 Probable transmembrane protein no 0.55
    4 GFF5945 Membrane-bound lytic murein transglycosylase A no 0.51
    5 GFF6174 Fluoride ion transporter CrcB no 0.49
    6 GFF4628 hypothetical protein no 0.49
    7 GFF798 Cardiolipin synthase (EC 2.7.8.-) phosphatidylethanolamine-utilizing, bacterial type ClsC no 0.49
    8 GFF2002 Thioredoxin related protein PA2694 no 0.48
    9 GFF2964 L-carnitine dehydratase/bile acid-inducible protein F no 0.48
    10 GFF6058 ABC transporter, permease protein 1 (cluster 1, maltose/g3p/polyamine/iron) no 0.47
    11 GFF4089 Glutamate/aspartate ABC transporter, permease protein GltJ (TC 3.A.1.3.4) no 0.46
    12 GFF2216 Uncharacterized protein Tbd_1903 no 0.46
    13 GFF2957 UPF0192 protein YfaS no 0.46
    14 GFF4229 Transcriptional regulator 0.30 0.45
    15 GFF905 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) no 0.45
    16 GFF4664 hypothetical protein no 0.45
    17 GFF5185 FIG00732904: hypothetical protein no 0.45
    18 GFF7314 no description no 0.44
    19 GFF5456 L-threonate/D-erythronate transcriptional regulator, GntR family no 0.44
    20 GFF4987 3-fumarylpyruvate hydrolase (EC 3.7.1.20) no 0.44

    Or look for negative cofitness