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  • Top cofit genes for GFF723 from Variovorax sp. SCN45

    RNA polymerase ECF-type sigma factor
    KEGG: RNA polymerase sigma-70 factor, ECF subfamily

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF4973 Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1) no 0.56
    2 GFF2458 CzcABC family efflux RND transporter, membrane fusion protein no 0.54
    3 GFF4522 Uncharacterized MFS-type transporter no 0.54
    4 GFF767 Alpha-amylase (EC 3.2.1.1) no 0.52
    5 GFF7313 hypothetical protein no 0.51
    6 GFF1941 hypothetical protein no 0.51
    7 GFF4766 identified by similarity to GB:AAK22812.1; match to protein family HMM PF06676 no 0.50
    8 GFF2599 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) no 0.50
    9 GFF4090 Glutamate/aspartate ABC transporter, permease protein GltK (TC 3.A.1.3.4) no 0.50
    10 GFF5808 Putative oxidoreductase no 0.50
    11 GFF770 Limit dextrin alpha-1,6-maltotetraose-hydrolase (EC 3.2.1.196) no 0.50
    12 GFF5210 hypothetical protein no 0.49
    13 GFF517 no description no 0.49
    14 GFF1409 hypothetical protein no 0.48
    15 GFF6808 Peroxiredoxin OsmC (EC 1.11.1.15) no 0.48
    16 GFF362 Enoyl-CoA hydratase (EC 4.2.1.17) no 0.48
    17 GFF2981 no description no 0.48
    18 GFF1115 Putative transmembrane protein no 0.48
    19 GFF768 Trehalose synthase (EC 5.4.99.16) no 0.48
    20 GFF452 Chloride channel protein no 0.48

    Or look for negative cofitness