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  • Top cofit genes for GFF72 from Variovorax sp. SCN45

    D-threo-3-hydroxyaspartate ammonia-lyase (EC 4.3.1.-)
    SEED: Type III PLP / low-specificity D-threonine aldolase

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF3758 NAD-specific glutamate dehydrogenase (EC 1.4.1.2); NADP-specific glutamate dehydrogenase (EC 1.4.1.4) 0.22 0.66
    2 GFF6390 GtrA-like protein 0.29 0.65
    3 GFF7051 hypothetical protein no 0.64
    4 GFF6642 ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) no 0.63
    5 GFF6049 Acyl-CoA dehydrogenase family protein no 0.61
    6 GFF5774 RNA polymerase sigma factor for flagellar operon 0.58 0.60
    7 GFF7295 HPr kinase/phosphorylase no 0.60
    8 GFF2653 Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) no 0.60
    9 GFF7117 2-hydroxymuconic semialdehyde hydrolase (EC 3.7.1.9) no 0.59
    10 GFF312 FIG021862: membrane protein, exporter no 0.59
    11 GFF1704 FIG00901292: hypothetical protein no 0.58
    12 GFF2958 hypothetical protein no 0.56
    13 GFF2794 Molybdopterin synthase catalytic subunit MoaE (EC 2.8.1.12) no 0.56
    14 GFF3771 no description no 0.56
    15 GFF239 DNA polymerase III chi subunit (EC 2.7.7.7) no 0.55
    16 GFF1007 Xanthine-guanine phosphoribosyltransferase (EC 2.4.2.22) no 0.55
    17 GFF6173 Na(+) H(+) antiporter subunit A / Na(+) H(+) antiporter subunit B no 0.55
    18 GFF4396 Mobile element protein no 0.54
    19 GFF5957 Uncharacterized MFS-type transporter no 0.53
    20 GFF5995 LysR family transcriptional regulator STM3121 no 0.53

    Or look for negative cofitness